Novartis Open Source Initiative

The package analyzes chromatin and multi-omic experiments. It extends the MultiAssayExperiment object and builds a ChrawExperiment object from ENCODE’s output. It performs QC plotting, identifies differential events and other functionalities. More details in package vignettes.

A bslib toolkit for building modern, themeable dashboards in Shiny.

A Python library for benchmarking uncertainty estimation and quantification methods for Machine Learning models predictions.

Deep survival analysis made easy

Applied modelling in drug development: flexible Bayesian regression modelling in Stan via brms

Exploratory Graphics for PKPD data

Implementation of caMPO (Correlation-aware Multiparameter Optimization), a method for deriving data-driven non-negative MPO weights from property correlation structure in drug discovery.

Go here for requests and support

This pipeline is designed for AAV integration site analysis using Target Enrichment Sequencing (TES) coupled with PacBio long-read sequencing. It enables the detection of integration site breakpoints and provides information on the structure of the integrated AAV vector genome to support the safety assessment of AAV-based gene therapies.