🐍 DRAGEN Tumor/Normal workflow post-processing
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Sep 18, 2023 - Python
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pcgr
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Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake
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Aug 5, 2026 - Python
Somatic variant and fusion calling for Illumina cancer panels: DNA (SNVs/indels via GATK) and RNA (gene fusions via STAR + Arriba), with clinical interpretation through PCGR. Panel profiles for 22 kits. Research use only — not a validated diagnostic system.
bioinformatics rna-seq somatic-variants ngs gatk bioinformatics-pipeline cancer-genomics variant-calling mutect2 precision-oncology gene-fusions pcgr star-aligner arriba ffpe
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Sep 14, 2026 - Python
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