Code for "Using machine learning to combine genetic and environmental data for maize grain yield predictions across multi-environment trials" (Fernandes et. al 2024)
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Jul 23, 2024 - Python
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gxe
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An R package for the Latent Environmental & Genetic InTeraction (LEGIT) model
environment r genetics glm interactions latent-variable-models genetic-variants gxe latent-variables gxe-modelling
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Feb 11, 2021 - R
See https://biometris.github.io/statgenGxE for a full description
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Nov 12, 2025 - R
Genome-wide association analysis of phenotypic plasticity in the maize nested association mapping population
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Dec 21, 2021 - R
SAS macros for the Latent Environmental & Genetic InTeraction (LEGIT) model
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May 10, 2017 - SAS
Your one-stop solution for comprehensive genotype × environment interaction and stability analysis (AMMI model) using the metan package. Save time, perform analyses for all traits at once, and gain insightful visualizations effortlessly!"
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May 11, 2026 - R
Joint meta-analysis of 2-df gene and gene-environment tests in GWAS.
meta-analysis statistical-genetics gxe genetic-epidemiology gwas-tools gwas-summary-statistics gene-environment-interaction
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May 5, 2022 - R
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