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@stjude

St. Jude Children's Research Hospital

Finding Cures, Saving Children.

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  1. learngenomics.dev learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    JavaScript 461 39

  2. ROSE ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    Python 72 19

  3. proteinpaint proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    TypeScript 51 15

  4. ChIPseqSpikeInFree ChIPseqSpikeInFree Public

    A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

    R 44 13

  5. CICERO CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    Perl 44 23

  6. RNAIndel RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    Python 24 8

Repositories

Showing 10 of 57 repositories
  • proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    stjude/proteinpaint's past year of commit activity
    TypeScript 51 15 93 9 Updated Sep 12, 2026
  • comet Public

    Comet Publication

    stjude/comet's past year of commit activity
    R 0 0 0 0 Updated Sep 10, 2026
  • zFISHer Public
    stjude/zFISHer's past year of commit activity
    Python 1 MIT 1 0 0 Updated Sep 10, 2026
  • MyGPT Public

    A privacy-first, open-source Retrieval-Augmented Generation platform with real-time confidence metrics and source highlighting

    stjude/MyGPT's past year of commit activity
    TypeScript 1 GPL-3.0 0 0 3 Updated Sep 9, 2026
  • icore-image Public
    stjude/icore-image's past year of commit activity
    Python 5 1 4 5 Updated Sep 4, 2026
  • MyGPT-evaluations Public

    This repository includes the evaluation datasets, scripts, and outputs used in the MyGPT paper.

    stjude/MyGPT-evaluations's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 29, 2026
  • CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    stjude/CICERO's past year of commit activity
    Perl 44 23 7 1 Updated Aug 28, 2026
  • ChIPseqSpikeInFree Public

    A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

    stjude/ChIPseqSpikeInFree's past year of commit activity
    R 44 Apache-2.0 13 11 1 Updated Aug 27, 2026
  • prosper-search Public

    PROSPER: Pediatric Retrieval for Oncology Slides, Pathology Evidence, and Reporting — morphological search, Bayesian disease probability, and grounded LLM summarization for whole slide images.

    stjude/prosper-search's past year of commit activity
    Python 0 0 0 5 Updated Jul 31, 2026
  • radial-intensity-analysis Public

    A snakemake workflow for performing radial intensity analysis of signals in the nucleolus

    stjude/radial-intensity-analysis's past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Jul 1, 2026
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