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@sriram-lab

Systems Biology at University of Michigan

Machine learning and constraint-based modeling software from the Chandrasekaran Lab

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  1. MetOncoFit MetOncoFit Public

    Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors.

    HTML 1 6

  2. astrix astrix Public

    Using gene expression data to identify regulatory interactions between transcription factors and target genes.

    MATLAB 1

  3. egem egem Public

    epigenome scale metabolic modeling for cancer metabolism

    MATLAB 4 2

  4. dfa dfa Public

    Fitting time-course metabolomics onto genome-scale metabolic models for inferring metabolic activity.

    MATLAB 1 1

  5. MAGENTA MAGENTA Public

    Metabolism And GENomics-based Tailoring of Antibiotic regimens: predicts the impact of pathogen environment on antibiotic potency based on chemogenomic data.

    C++ 1 1

Repositories

Showing 10 of 25 repositories
  • CFRpy Public

    The Python implementation of constrain flux regulation (CFR)

    sriram-lab/CFRpy's past year of commit activity
    Jupyter Notebook 0 0 0 7 Updated Jul 23, 2026
  • TopoMPI Public
    sriram-lab/TopoMPI's past year of commit activity
    Python 3 0 0 0 Updated Jul 15, 2026
  • OMG-ML Public
    sriram-lab/OMG-ML's past year of commit activity
    MATLAB 0 MIT 0 0 0 Updated Jun 23, 2026
  • TACTIC Public

    Transfer-learning And Cross-species Training to Infer Combination therapies

    sriram-lab/TACTIC's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated May 25, 2026
  • Metab8D Public

    Using multiomic machine learning to identify potential key metabolomic regulators

    sriram-lab/Metab8D's past year of commit activity
    Jupyter Notebook 1 0 0 2 Updated May 13, 2026
  • SCOOTI Public

    Single Cell Optimization Objective and Tradeoff Inference

    sriram-lab/SCOOTI's past year of commit activity
    Python 0 AGPL-3.0 1 2 2 Updated Apr 27, 2026
  • M2D2 Public
    sriram-lab/M2D2's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jan 30, 2026
  • CARAMeL Public

    Condition-specific Antibiotic Regimen Assessment using Mechanistic Learning

    sriram-lab/CARAMeL's past year of commit activity
    MATLAB 1 GPL-3.0 1 0 0 Updated Jan 22, 2026
  • phosphorylation Public
    sriram-lab/phosphorylation's past year of commit activity
    Python 0 1 0 0 Updated Sep 1, 2025
  • emt-cobra Public

    Modeling the metabolic changes during the epithelial-to-mesenchymal transition.

    sriram-lab/emt-cobra's past year of commit activity
    HTML 4 GPL-3.0 2 0 0 Updated Dec 7, 2024
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