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snakemake-wrappers
snakemake-wrappers PublicThis is the development home of the Snakemake wrapper repository, see
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snakemake-github-action
snakemake-github-action PublicA Github action for running a Snakemake workflow
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snakemake-executor-plugin-slurm
snakemake-executor-plugin-slurm PublicA Snakemake executor plugin for submitting jobs to a SLURM cluster
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snakemake-workflow-catalog
snakemake-workflow-catalog PublicA statically generated catalog of available Snakemake workflows
Repositories
- snakemake Public
This is the development home of the workflow management system Snakemake. For general information, see
- snakemake-report-plugin-nanopub Public
Snakemake Report Plugin to automatically create Nanopubs after workflow runs holding all metadata of that workflow
- snakemake-infrastructure-profiles Public
The snakemake-profiles repository is an effort to create configuration profiles for executing Snakemake in specific institutional cluster or compute environments. It is meant to complement the executor plugins, which are designed for specifying execution on general architectures such as SLURM, LSF, etc.
- snakemake-report-plugin-rocrate Public
Snakemake Report Plugin to automatically create Workflow Run RO-Crate after workflow runs holding all metadata of that workflow
- snakemake-software-deployment-plugin-conda Public
A Snakemake software deployment plugin for using conda packages. Implemented using py-rattler.
- snakemake-executor-plugin-slurm Public
A Snakemake executor plugin for submitting jobs to a SLURM cluster
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