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@PennChopMicrobiomeProgram

PennChopMicrobiomeProgram

Bioinformatics software for microbiome science

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  1. adonisplus adonisplus Public

    R 3 2

  2. mirix mirix Public

    Quantify the susceptibility of a bacterial community to an antibiotic.

    R 3 1

  3. dnabc dnabc Public

    Identify DNA barcodes in high-throughput sequencing data files

    Python 6

  4. unassigner unassigner Public

    Type strain identification for 16S reads

    Python 5 5

Repositories

Showing 10 of 35 repositories
  • seqBackup Public
    PennChopMicrobiomeProgram/seqBackup's past year of commit activity
    Python 1 5 1 4 Updated Sep 15, 2026
  • nanopore_demux Public

    A simple script to demultiplex nanopore runs based on the header

    PennChopMicrobiomeProgram/nanopore_demux's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 15, 2026
  • SampleRegistry Public

    Web application to keep track of samples sequenced

    PennChopMicrobiomeProgram/SampleRegistry's past year of commit activity
    Python 0 3 8 4 Updated Aug 25, 2026
  • vccweb Public

    HVP Virome Characterization Center (VCC) sample browser

    PennChopMicrobiomeProgram/vccweb's past year of commit activity
    HTML 0 0 0 0 Updated Aug 9, 2026
  • marc_db Public
    PennChopMicrobiomeProgram/marc_db's past year of commit activity
    Python 0 0 0 2 Updated Jul 20, 2026
  • unassigner Public

    Type strain identification for 16S reads

    PennChopMicrobiomeProgram/unassigner's past year of commit activity
    Python 5 5 8 4 Updated Jun 18, 2026
  • marc_web Public

    A web interface for querying mARC

    PennChopMicrobiomeProgram/marc_web's past year of commit activity
    HTML 0 2 0 7 Updated May 11, 2026
  • heyfastq Public

    FASTQ utilities in pure python with no dependencies

    PennChopMicrobiomeProgram/heyfastq's past year of commit activity
    Jupyter Notebook 0 1 6 3 Updated Apr 16, 2026
  • CHOP_metadata_checker Public
    PennChopMicrobiomeProgram/CHOP_metadata_checker's past year of commit activity
    HTML 0 3 11 8 Updated Apr 13, 2026
  • primertrim Public

    Trim primers from reads

    PennChopMicrobiomeProgram/primertrim's past year of commit activity
    Python 1 1 0 1 Updated Apr 8, 2026
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