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Update cogent3 requirement from >=2026.8.26 to >=2026.9.10 - #119

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Updates the requirements on cogent3 to permit the latest version.

Changelog

Sourced from cogent3's changelog.

Changes in release "2026.9.10"

A maintenance release.

Contributors

Deprecations

  • All code marked for removal by 2026.9 has now been deleted.

Changes in release "2026.8.26"

Minor enhancement update.

Contributors

Enhancements

  • Added Sequence.set_repr_policy(), controlling num_pos and wrap for both the text and HTML representations.
  • set_repr_policy() is now available on Alignment, and the text representations of SequenceCollection and Alignment honour num_pos rather than a hardcoded limit.
  • A collection's repr policy now propagates to its member sequences.

Documentation

  • Changed from Sphinx and restructured text to Quartodoc and their dialect of markdown. While I personally love rst, it's clear Markdown has won the lightweight markup battle and, more critically, is the lingua franca of AI agents.

Changes in release "2026.7.30a0"

Minor enhancement and bug fix release.

Contributors

Enhancements

  • New cogent3.available_seq_formats displays supported sequence formats and their suffixes.

... (truncated)

Commits
  • 5bda4b1 Merge pull request #2731 from GavinHuttley/develop
  • 70cc624 DOC: remove references to deprecated modules
  • 2357217 Merge pull request #2730 from GavinHuttley/develop
  • f13421d DOC: update code snippets to removal of cogent3.util.io
  • 9a0820f Merge pull request #2729 from GavinHuttley/develop
  • cbcedf5 DEV: bump version to 2026.9.10
  • 97542a5 Merge pull request #2728 from GavinHuttley/develop
  • a7efcf3 MAINT: remove import of deleted module from TYPE_CHECKING block
  • 3792966 DEV: deleted code and modules marked for removal by 2026.9
  • 75b818e Merge pull request #2726 from cogent3/dependabot/pip/ruff-0.16.5
  • Additional commits viewable in compare view

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Updates the requirements on [cogent3](https://github.com/cogent3/cogent3) to permit the latest version.
- [Release notes](https://github.com/cogent3/cogent3/releases)
- [Changelog](https://github.com/cogent3/cogent3/blob/develop/changelog.md)
- [Commits](cogent3/cogent3@2026.8.26...2026.9.10)

---
updated-dependencies:
- dependency-name: cogent3
  dependency-version: 2026.9.10
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Sep 20, 2026
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Up to standards ✅

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