Helper scripts for AIDA data management, MRI processing, behavioral video processing, DataLad workflows, and meeting utilities.
| Folder | Purpose |
|---|---|
AIDAmri_helper_tools |
Validate Bruker-style acquisitions for missing method files and malformed subject metadata. |
Assign_Speaker_LabMeeting |
Randomly assign lab-meeting presenters while avoiding consecutive assignments. |
BulkzipFolder |
Archive every immediate subfolder using zip, pigz, and pv. |
CitationsReport |
Generate OpenAlex-based citation reports from an ORCID/name query. |
CopyFiles |
GUI for copying matching files and folders while retaining relative paths. |
CopyFolders |
GUI variants for copying matching folders or files. |
CorrectBIDS_AIDAmri |
Apply project-specific cleanup to mouse MRI BIDS datasets. |
CreateGroupMapping |
Build a text list of matching subfolder names. |
CropVideo4DLC |
Crop, rotate, and change the frame rate of videos for DeepLabCut. |
CropVideo_mulitpleFiles_option |
Historical and current multi-video crop tools plus a behavior-video copier. |
CropVideo_singleFiles |
Historical single- and folder-based crop/FPS utilities. |
CropVideos |
OCR video labels and optionally rename matching videos. |
DataLad |
Upload, inspect, compare, and process DataLad/git-annex datasets. |
Datalad-Replace-zip |
Prepare annexed ZIP files for manual replacement by extracted folders. |
IdentifyVideoFileName |
OCR experiment labels and create standardized behavioral-video names. |
MeetingTranscriber |
Local transcription, speaker diarization, and meeting summaries on Apple Silicon. |
StrokeMask_automated |
Register and generate longitudinal stroke-related MRI masks. |
ZipFixedSize |
Split a directory into size-limited ZIP archives. |
check_files_aidamri |
Create a CSV inventory of BIDS-like NIfTI filenames. |
copy_stroke_masks |
Move stroke masks into matching subject/session folders. |
reset_naming |
Apply a project-specific rename transformation to stroke-mask files. |
Each folder has its own README with requirements, usage, outputs, and safety notes. Several tools modify, move, or delete data; test them on a copy first.